A couple of ideas; the basics:
Please post any and all trouble codes.
The immobilizer; can get goofy, when the battery gets low. I would try a hard reset; see if that helps (remove pos/neg cables; touch for 30 seconds and install back on the battery).
How long was the car in storage? It is possible; that the gas has gone bad, making it hard to start. Siphon out the bad gas; fill with fresh and maybe some fuel treatment/conditioner. I removed the fuel pump and used a fuel siphon tool, that I got from harbor freight.
I would clean and align the throttle body; as these can lose their settings if the battery goes dead.
I would test the fuel pump; get a fuel pressure gage and test the fuel pressure. You can rent (free) or purchase, a fuel pressure test kit from most auto parts stores. Harbor Freight has them on sale; for less than $20 with a 20% coupon.
Here are the fuel pressure testing steps:
Volkswagen Workshop Manuals > Beetle L4-2.0L (AEG) (2000) > Powertrain Management > Tune-up and Engine Performance Checks > Fuel Pressure > System Information > Specifications > Pressure, Vacuum and Temperature Specifications
Those are some basic ideas; the trouble codes, could give you some more info, that could point you in the right direction. Please post them up and do some testing, we will go from there.
Please post any and all trouble codes.
The immobilizer; can get goofy, when the battery gets low. I would try a hard reset; see if that helps (remove pos/neg cables; touch for 30 seconds and install back on the battery).
How long was the car in storage? It is possible; that the gas has gone bad, making it hard to start. Siphon out the bad gas; fill with fresh and maybe some fuel treatment/conditioner. I removed the fuel pump and used a fuel siphon tool, that I got from harbor freight.
I would clean and align the throttle body; as these can lose their settings if the battery goes dead.
I would test the fuel pump; get a fuel pressure gage and test the fuel pressure. You can rent (free) or purchase, a fuel pressure test kit from most auto parts stores. Harbor Freight has them on sale; for less than $20 with a 20% coupon.
Here are the fuel pressure testing steps:
Volkswagen Workshop Manuals > Beetle L4-2.0L (AEG) (2000) > Powertrain Management > Tune-up and Engine Performance Checks > Fuel Pressure > System Information > Specifications > Pressure, Vacuum and Temperature Specifications
Those are some basic ideas; the trouble codes, could give you some more info, that could point you in the right direction. Please post them up and do some testing, we will go from there.