The fan control module acts as the relay for the A/C compressor, so it definitely could be the problem. See this thread for all the information you ever wanted to know about the fan control module:
http://newbeetle.org/forums/questio...3260-summers-coming-here-check-your-fans.html
http://newbeetle.org/forums/questio...3260-summers-coming-here-check-your-fans.html